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Ruff degradation template

Ruff degradation template: D-Glucose is oxidised by bromine water to D-gluconic acid; its calcium salt with Fe³⁺ and H₂O₂ loses one electron, the carboxyl radical loses CO₂, and oxidation of the α-hydroxy radical gives the aldehyde of D-arabinose (simplified radical mechanism).
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D-Glucose is oxidised by bromine water to D-gluconic acid; its calcium salt with Fe³⁺ and H₂O₂ loses one electron, the carboxyl radical loses CO₂, and oxidation of the α-hydroxy radical gives the aldehyde of D-arabinose (simplified radical mechanism).

Mechanism step by step

An aldose loses C1 as CO₂: the calcium aldonate with H₂O₂ and Fe³⁺ gives the aldose with one carbon fewer

  1. Oxidation – Bromine water oxidises the aldehyde to D-gluconic acid (summarised); CaCO₃ then gives the Ca²⁺ salt
  2. Electron transfer – Fe³⁺ takes one electron from the carboxylate: a carboxyl radical (summarised)
  3. Loss of CO₂ – The C1–C2 bond breaks homolytically: CO₂ and an α-hydroxy radical at the old C2
  4. Oxidation to the aldehyde – A second Fe³⁺ takes one electron and H⁺ is lost: D-arabinose (summarised)

Key points

  • C1 leaves as CO₂ and C2 becomes the new aldehyde carbon, so the C2 stereocentre is destroyed: D-glucose and D-mannose (C2 epimers) both give D-arabinose.
  • H₂O₂ re-oxidises Fe²⁺ to Fe³⁺, so only a catalytic amount of iron is needed.
  • The reverse of the Kiliani–Fischer synthesis; it shortens a D-aldose to the next lower D-aldose (the C4/C5 configuration is kept).
  • Simplified radical mechanism: the details of the Fe³⁺/H₂O₂ step are not fully settled.

Drawn with 132 atoms, 8 arrows, 9 shapes – every one editable in MolDraw.

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Frequently asked questions

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Every structure is checked with RDKit and every curly arrow passes MolDraw’s electron-flow audit. The sources used are listed on this page.

Are the biochemical pathways drawn with structures?

Yes. Pathway templates show the intermediates as structures, with enzymes and cofactors (NAD⁺, FAD, ATP) on the arrows.

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